J3_8AAF_014
3D structure
- PDB id
- 8AAF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast RQC complex in state G
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- CUC*GAA*UAAAAG
- Length
- 12 nucleotides
- Bulged bases
- 8AAF|1|f|A|2703
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8AAF_014 not in the Motif Atlas
- Homologous match to J3_8C3A_010
- Geometric discrepancy: 0.0805
- The information below is about J3_8C3A_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91491.5
- Basepair signature
- cWW-F-tWW-tHW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
8AAF|1|f|C|2664
8AAF|1|f|U|2665
8AAF|1|f|C|2666
*
8AAF|1|f|G|2690
8AAF|1|f|A|2691
8AAF|1|f|A|2692
*
8AAF|1|f|U|2701
8AAF|1|f|A|2702
8AAF|1|f|A|2703
8AAF|1|f|A|2704
8AAF|1|f|A|2705
8AAF|1|f|G|2706
Current chains
- Chain f
- 25S rRNA
Nearby chains
- Chain G
- 60S ribosomal protein L21-A
- Chain h
- 5S ribosomal RNA; 5S rRNA
- Chain m
- 60S ribosomal protein L5
- Chain s
- 60S ribosomal protein L11-A
- Chain y
- Transfer RNA; tRNA
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