J3_8AGT_020
3D structure
- PDB id
- 8AGT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast RQC complex in state F
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CGAUAGCGAACAAGUAC*GGAAAG*CUUG
- Length
- 27 nucleotides
- Bulged bases
- 8AGT|1|f|U|343, 8AGT|1|f|A|351, 8AGT|1|i|U|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8AGT_020 not in the Motif Atlas
- Homologous match to J3_8P9A_045
- Geometric discrepancy: 0.0483
- The information below is about J3_8P9A_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
8AGT|1|f|C|340
8AGT|1|f|G|341
8AGT|1|f|A|342
8AGT|1|f|U|343
8AGT|1|f|A|344
8AGT|1|f|G|345
8AGT|1|f|C|346
8AGT|1|f|G|347
8AGT|1|f|A|348
8AGT|1|f|A|349
8AGT|1|f|C|350
8AGT|1|f|A|351
8AGT|1|f|A|352
8AGT|1|f|G|353
8AGT|1|f|U|354
8AGT|1|f|A|355
8AGT|1|f|C|356
*
8AGT|1|f|G|363
8AGT|1|f|G|364
8AGT|1|f|A|365
8AGT|1|f|A|366
8AGT|1|f|A|367
8AGT|1|f|G|368
*
8AGT|1|i|C|21
8AGT|1|i|U|22
8AGT|1|i|U|23
8AGT|1|i|G|24
Current chains
- Chain f
- 25S rRNA
- Chain i
- 5.8S rRNA
Nearby chains
- Chain 1
- CAT tailed nascent peptide
- Chain L
- 60S ribosomal protein L26-A
- Chain W
- 60S ribosomal protein L37-A
- Chain Y
- 60S ribosomal protein L39
- Chain l
- 60S ribosomal protein L4-A
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