J3_8AGZ_005
3D structure
- PDB id
- 8AGZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast RQC complex in state with the RING domain of Ltn1 in the OUT position
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- AUAG*CGUAG*UCGAAU
- Length
- 15 nucleotides
- Bulged bases
- 8AGZ|1|f|A|896
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8AGZ_005 not in the Motif Atlas
- Homologous match to J3_5TBW_005
- Geometric discrepancy: 0.0896
- The information below is about J3_5TBW_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_33851.1
- Basepair signature
- cWW-tSH-F-F-tHS-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
8AGZ|1|f|A|828
8AGZ|1|f|U|829
8AGZ|1|f|A|830
8AGZ|1|f|G|831
*
8AGZ|1|f|C|863
8AGZ|1|f|G|864
8AGZ|1|f|U|865
8AGZ|1|f|A|866
8AGZ|1|f|G|867
*
8AGZ|1|f|U|892
8AGZ|1|f|C|893
8AGZ|1|f|G|894
8AGZ|1|f|A|895
8AGZ|1|f|A|896
8AGZ|1|f|U|897
Current chains
- Chain f
- 25S rRNA
Nearby chains
- Chain E
- 60S ribosomal protein L19-A
- Chain T
- 60S ribosomal protein L34-A
- Chain j
- 60S ribosomal protein L2-A
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