J3_8AGZ_012
3D structure
- PDB id
- 8AGZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast RQC complex in state with the RING domain of Ltn1 in the OUT position
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- AUUG*CUUAUU*AAGACAUU
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8AGZ_012 not in the Motif Atlas
- Homologous match to J3_8C3A_008
- Geometric discrepancy: 0.064
- The information below is about J3_8C3A_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_18654.1
- Basepair signature
- cWW-F-F-tSH-tHW-F-F-F-cWW-F-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
8AGZ|1|f|A|2432
8AGZ|1|f|U|2433
8AGZ|1|f|U|2434
8AGZ|1|f|G|2435
*
8AGZ|1|f|C|2512
8AGZ|1|f|U|2513
8AGZ|1|f|U|2514
8AGZ|1|f|A|2515
8AGZ|1|f|U|2516
8AGZ|1|f|U|2517
*
8AGZ|1|f|A|2590
8AGZ|1|f|A|2591
8AGZ|1|f|G|2592
8AGZ|1|f|A|2593
8AGZ|1|f|C|2594
8AGZ|1|f|A|2595
8AGZ|1|f|U|2596
8AGZ|1|f|U|2597
Current chains
- Chain f
- 25S rRNA
Nearby chains
- Chain A
- 60S ribosomal protein L15-A
- Chain V
- 60S ribosomal protein L36-A
- Chain a
- RQC2 isoform 1
- Chain j
- 60S ribosomal protein L2-A
- Chain p
- 60S ribosomal protein L8-A
Coloring options: