3D structure

PDB id
8AKN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.3 Å

Loop

Sequence
CAAG*CUAGUAA*UGAAUACG
Length
19 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8AKN_005 not in the Motif Atlas
Homologous match to J3_4LFB_002
Geometric discrepancy: 0.0686
The information below is about J3_4LFB_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_25303.4
Basepair signature
cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW
Number of instances in this motif group
4

Unit IDs

8AKN|1|B|C|936
8AKN|1|B|A|937
8AKN|1|B|A|938
8AKN|1|B|G|939
*
8AKN|1|B|C|1344
8AKN|1|B|U|1345
8AKN|1|B|A|1346
8AKN|1|B|G|1347
8AKN|1|B|U|1348
8AKN|1|B|A|1349
8AKN|1|B|A|1350
*
8AKN|1|B|U|1372
8AKN|1|B|G|1373
8AKN|1|B|A|1374
8AKN|1|B|A|1375
8AKN|1|B|U|1376
8AKN|1|B|A|1377
8AKN|1|B|C|1378
8AKN|1|B|G|1379

Current chains

Chain B
16S ribosomal RNA

Nearby chains

Chain H
30S ribosomal protein S7
Chain J
30S ribosomal protein S9
Chain Z
Transfer RNA; tRNA

Coloring options:


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