3D structure

PDB id
8AKN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.3 Å

Loop

Sequence
UUUAAUUC*GAAGAACCUUAC*GGCUA
Length
25 nucleotides
Bulged bases
8AKN|1|B|A|975, 8AKN|1|B|G|976, 8AKN|1|B|A|978
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8AKN_007 not in the Motif Atlas
Homologous match to J3_5J7L_006
Geometric discrepancy: 0.0648
The information below is about J3_5J7L_006
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_83516.4
Basepair signature
cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

8AKN|1|B|U|955
8AKN|1|B|U|956
8AKN|1|B|U|957
8AKN|1|B|A|958
8AKN|1|B|A|959
8AKN|1|B|U|960
8AKN|1|B|U|961
8AKN|1|B|C|962
*
8AKN|1|B|G|973
8AKN|1|B|A|974
8AKN|1|B|A|975
8AKN|1|B|G|976
8AKN|1|B|A|977
8AKN|1|B|A|978
8AKN|1|B|C|979
8AKN|1|B|C|980
8AKN|1|B|U|981
8AKN|1|B|U|982
8AKN|1|B|A|983
8AKN|1|B|C|984
*
8AKN|1|B|G|1221
8AKN|1|B|G|1222
8AKN|1|B|C|1223
8AKN|1|B|U|1224
8AKN|1|B|A|1225

Current chains

Chain B
16S ribosomal RNA

Nearby chains

Chain J
30S ribosomal protein S9
Chain K
30S ribosomal protein S10
Chain N
30S ribosomal protein S13
Chain O
30S ribosomal protein S14
Chain T
30S ribosomal protein S19
Chain W
Peptide chain release factor RF1

Coloring options:


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