3D structure

PDB id
8AKN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.3 Å

Loop

Sequence
CUUG*CAG*CUUACG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8AKN_008 not in the Motif Atlas
Homologous match to J3_4LFB_005
Geometric discrepancy: 0.1317
The information below is about J3_4LFB_005
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_82572.1
Basepair signature
cWW-tSH-tWW-F-cWW-tHW-F-F-cWW
Number of instances in this motif group
2

Unit IDs

8AKN|1|B|C|990
8AKN|1|B|U|991
8AKN|1|B|U|992
8AKN|1|B|G|993
*
8AKN|1|B|C|1045
8AKN|1|B|A|1046
8AKN|1|B|G|1047
*
8AKN|1|B|C|1210
8AKN|1|B|U|1211
8AKN|1|B|U|1212
8AKN|1|B|A|1213
8AKN|1|B|C|1214
8AKN|1|B|G|1215

Current chains

Chain B
16S ribosomal RNA

Nearby chains

Chain O
30S ribosomal protein S14
Chain W
Peptide chain release factor RF1

Coloring options:


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