J3_8AM9_007
3D structure
- PDB id
- 8AM9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the elongating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCUA
- Length
- 25 nucleotides
- Bulged bases
- 8AM9|1|B|A|975, 8AM9|1|B|G|976, 8AM9|1|B|A|978
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8AM9_007 not in the Motif Atlas
- Homologous match to J3_5J7L_006
- Geometric discrepancy: 0.0632
- The information below is about J3_5J7L_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.4
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8AM9|1|B|U|955
8AM9|1|B|U|956
8AM9|1|B|U|957
8AM9|1|B|A|958
8AM9|1|B|A|959
8AM9|1|B|U|960
8AM9|1|B|U|961
8AM9|1|B|C|962
*
8AM9|1|B|G|973
8AM9|1|B|A|974
8AM9|1|B|A|975
8AM9|1|B|G|976
8AM9|1|B|A|977
8AM9|1|B|A|978
8AM9|1|B|C|979
8AM9|1|B|C|980
8AM9|1|B|U|981
8AM9|1|B|U|982
8AM9|1|B|A|983
8AM9|1|B|C|984
*
8AM9|1|B|G|1221
8AM9|1|B|G|1222
8AM9|1|B|C|1223
8AM9|1|B|U|1224
8AM9|1|B|A|1225
Current chains
- Chain B
- 16S ribosomal RNA
Nearby chains
- Chain 8
- Transfer RNA; tRNA
- Chain J
- 30S ribosomal protein S9
- Chain K
- 30S ribosomal protein S10
- Chain N
- 30S ribosomal protein S13
- Chain O
- 30S ribosomal protein S14
- Chain T
- 30S ribosomal protein S19
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