J3_8AM9_014

3D structure

PDB id

8AM9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the elongating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8AM9_014 not in the Motif Atlas

Homologous match to J3_7RQB_001

Geometric discrepancy: 0.061

The information below is about J3_7RQB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_65070.3

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

4

Unit IDs

8AM9|1|a|G|30
8AM9|1|a|C|31
*
8AM9|1|a|G|474
8AM9|1|a|C|475
8AM9|1|a|G|476
8AM9|1|a|A|477
8AM9|1|a|A|478
8AM9|1|a|A|479
8AM9|1|a|A|480
8AM9|1|a|G|481
*
8AM9|1|a|C|509
8AM9|1|a|C|510

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain p

50S ribosomal protein L20

Chain t

50S ribosomal protein L24