J3_8AM9_038
3D structure
- PDB id
- 8AM9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the elongating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UG*UGUU*GCAA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8AM9_038 not in the Motif Atlas
- Homologous match to J3_4LFB_017
- Geometric discrepancy: 0.0887
- The information below is about J3_4LFB_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_79369.1
- Basepair signature
- cWW-cWW-tSS-F-F-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
8AM9|1|B|U|1073
8AM9|1|B|G|1074
*
8AM9|1|B|U|1083
8AM9|1|B|G|1084
8AM9|1|B|U|1085
8AM9|1|B|U|1086
*
8AM9|1|B|G|1099
8AM9|1|B|C|1100
8AM9|1|B|A|1101
8AM9|1|B|A|1102
Current chains
- Chain B
- 16S ribosomal RNA
Nearby chains
- Chain C
- 30S ribosomal protein S2
- Chain F
- 30S ribosomal protein S5
- Chain V
- 30S ribosomal protein S21
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