J3_8ANY_010
3D structure
- PDB id
- 8ANY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human mitochondrial ribosome in complex with LRPPRC, SLIRP, A-site, P-site, E-site tRNAs and mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.85 Å
Loop
- Sequence
- AGGA*UAC*GGAU
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8ANY_010 not in the Motif Atlas
- Homologous match to J3_4LFB_003
- Geometric discrepancy: 0.083
- The information below is about J3_4LFB_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44359.2
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
8ANY|1|AA|A|1198
8ANY|1|AA|G|1199
8ANY|1|AA|G|1200
8ANY|1|AA|A|1201
*
8ANY|1|AA|U|1364
8ANY|1|AA|A|1365
8ANY|1|AA|C|1366
*
8ANY|1|AA|G|1421
8ANY|1|AA|G|1422
8ANY|1|AA|A|1423
8ANY|1|AA|U|1424
Current chains
- Chain AA
- 12S mitochondrial rRNA
Nearby chains
- Chain AF
- 28S ribosomal protein S7, mitochondrial
- Chain AG
- 28S ribosomal protein S9, mitochondrial
- Chain Ax
- Transfer RNA; tRNA
- Chain Ay
- Transfer RNA; tRNA
Coloring options: