J3_8B0X_018

3D structure

PDB id

8B0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 70S ribosome in the unrotated state (P and E, tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.55 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

8B0X|1|a|A|1304

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8B0X_018 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.0538

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8B0X|1|a|C|1300
8B0X|1|a|G|1301
8B0X|1|a|G|1302
8B0X|1|a|A|1303
8B0X|1|a|A|1304
8B0X|1|a|G|1305
*
8B0X|1|a|C|1627
8B0X|1|a|A|1628
8B0X|1|a|G|1629
*
8B0X|1|a|C|1641
8B0X|1|a|A|1642
8B0X|1|a|A|1643
8B0X|1|a|G|1644

Current chains

Chain a

23S rRNA

Nearby chains