J3_8B2L_003
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- UGG*UGUGGUAGGCA*UCCGGA
- Length
- 20 nucleotides
- Bulged bases
- 8B2L|1|A3|U|574, 8B2L|1|A3|G|576, 8B2L|1|A3|C|616
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8B2L|1|A3|U|506
8B2L|1|A3|G|507
8B2L|1|A3|G|508
*
8B2L|1|A3|U|569
8B2L|1|A3|G|570
8B2L|1|A3|U|571
8B2L|1|A3|G|572
8B2L|1|A3|G|573
8B2L|1|A3|U|574
8B2L|1|A3|A|575
8B2L|1|A3|G|576
8B2L|1|A3|G|577
8B2L|1|A3|C|578
8B2L|1|A3|A|579
*
8B2L|1|A3|U|615
8B2L|1|A3|C|616
8B2L|1|A3|C|617
8B2L|1|A3|G|618
8B2L|1|A3|G|619
8B2L|1|A3|A|620
Current chains
- Chain A3
- 25S rRNA
Nearby chains
- Chain N3
- eL28 (60S ribosomal protein L28)
- Chain R3
- 60S ribosomal protein L32-1
- Chain S3
- eL33 (60S ribosomal protein L35a)
- Chain b3
- eL6 (60S ribosomal protein L6)
- Chain q3
- 60S ribosomal protein L7-4-like
- Chain s3
- uL4 (60S ribosomal protein L4)
Coloring options: