J3_8B2L_005

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CGG*CGCAGC*G(PSU)CUG

Length

14 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8B2L|1|A3|C|839
8B2L|1|A3|G|840
8B2L|1|A3|G|841
*
8B2L|1|A3|C|873
8B2L|1|A3|G|874
8B2L|1|A3|C|875
8B2L|1|A3|A|876
8B2L|1|A3|G|877
8B2L|1|A3|C|878
*
8B2L|1|A3|G|901
8B2L|1|A3|PSU|902
8B2L|1|A3|C|903
8B2L|1|A3|U|904
8B2L|1|A3|G|905

Current chains

Chain A3

25S rRNA

Nearby chains

Chain H3

Ribosomal protein L19

Chain T3

60S ribosomal protein L34

Chain V3

Ribosomal protein L37

Chain a3

60S ribosomal protein L37a

Chain o3

uL2 (60S ribosomal protein L8)