J3_8B2L_009

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

C(PSU)UUG*CUUAU*AGACAUUG

Length

18 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8B2L|1|A3|C|2434
8B2L|1|A3|PSU|2435
8B2L|1|A3|U|2436
8B2L|1|A3|U|2437
8B2L|1|A3|G|2438
*
8B2L|1|A3|C|2517
8B2L|1|A3|U|2518
8B2L|1|A3|U|2519
8B2L|1|A3|A|2520
8B2L|1|A3|U|2521
*
8B2L|1|A3|A|2594
8B2L|1|A3|G|2595
8B2L|1|A3|A|2596
8B2L|1|A3|C|2597
8B2L|1|A3|A|2598
8B2L|1|A3|U|2599
8B2L|1|A3|U|2600
8B2L|1|A3|G|2601

Current chains

Chain A3

25S rRNA

Nearby chains

Chain F3

Ribosomal protein L15

Chain U3

eL36 (60S ribosomal protein L36)

Chain c3

60S ribosomal protein L7a

Chain o3

uL2 (60S ribosomal protein L8)