J3_8B2L_010
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- AAGCG*CUCUUUUUGGACCCAAG*CGAU
- Length
- 26 nucleotides
- Bulged bases
- 8B2L|1|A3|U|2553, 8B2L|1|A3|U|2554, 8B2L|1|A3|U|2555, 8B2L|1|A3|G|2558
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8B2L|1|A3|A|2534
8B2L|1|A3|A|2535
8B2L|1|A3|G|2536
8B2L|1|A3|C|2537
8B2L|1|A3|G|2538
*
8B2L|1|A3|C|2550
8B2L|1|A3|U|2551
8B2L|1|A3|C|2552
8B2L|1|A3|U|2553
8B2L|1|A3|U|2554
8B2L|1|A3|U|2555
8B2L|1|A3|U|2556
8B2L|1|A3|U|2557
8B2L|1|A3|G|2558
8B2L|1|A3|G|2559
8B2L|1|A3|A|2560
8B2L|1|A3|C|2561
8B2L|1|A3|C|2562
8B2L|1|A3|C|2563
8B2L|1|A3|A|2564
8B2L|1|A3|A|2565
8B2L|1|A3|G|2566
*
8B2L|1|A3|C|2581
8B2L|1|A3|G|2582
8B2L|1|A3|A|2583
8B2L|1|A3|U|2584
Current chains
- Chain A3
- 25S rRNA
Nearby chains
- Chain F1
- 40S ribosomal protein S3a
- Chain M3
- eL27 (60S ribosomal protein L27)
- Chain P3
- 60S ribosomal protein L30-like
- Chain T3
- 60S ribosomal protein L34
- Chain a3
- 60S ribosomal protein L37a
- Chain c3
- 60S ribosomal protein L7a
- Chain o3
- uL2 (60S ribosomal protein L8)
Coloring options: