J3_8B2L_025
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CGAUAGCGAACAAGUAC*GGAAAG*CUCG
- Length
- 27 nucleotides
- Bulged bases
- 8B2L|1|A3|U|340, 8B2L|1|A3|A|348, 8B2L|1|B3|C|26
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8B2L_025 not in the Motif Atlas
- Homologous match to J3_8P9A_045
- Geometric discrepancy: 0.0494
- The information below is about J3_8P9A_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.2
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 11
Unit IDs
8B2L|1|A3|C|337
8B2L|1|A3|G|338
8B2L|1|A3|A|339
8B2L|1|A3|U|340
8B2L|1|A3|A|341
8B2L|1|A3|G|342
8B2L|1|A3|C|343
8B2L|1|A3|G|344
8B2L|1|A3|A|345
8B2L|1|A3|A|346
8B2L|1|A3|C|347
8B2L|1|A3|A|348
8B2L|1|A3|A|349
8B2L|1|A3|G|350
8B2L|1|A3|U|351
8B2L|1|A3|A|352
8B2L|1|A3|C|353
*
8B2L|1|A3|G|360
8B2L|1|A3|G|361
8B2L|1|A3|A|362
8B2L|1|A3|A|363
8B2L|1|A3|A|364
8B2L|1|A3|G|365
*
8B2L|1|B3|C|24
8B2L|1|B3|U|25
8B2L|1|B3|C|26
8B2L|1|B3|G|27
Current chains
- Chain A3
- 25S rRNA
- Chain B3
- 5.8S rRNA
Nearby chains
- Chain V3
- Ribosomal protein L37
- Chain X3
- 60S ribosomal protein L39-3
- Chain l3
- nascent chain
- Chain m3
- uL24 (60S ribosomal protein L26)
- Chain s3
- uL4 (60S ribosomal protein L4)
Coloring options: