J3_8B2L_028

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CGGCGAUG*UGG*CUGUGG

Length

17 nucleotides

Bulged bases

8B2L|1|A3|G|435, 8B2L|1|A3|U|631

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8B2L|1|A3|C|433
8B2L|1|A3|G|434
8B2L|1|A3|G|435
8B2L|1|A3|C|436
8B2L|1|A3|G|437
8B2L|1|A3|A|438
8B2L|1|A3|U|439
8B2L|1|A3|G|440
*
8B2L|1|A3|U|496
8B2L|1|A3|G|497
8B2L|1|A3|G|498
*
8B2L|1|A3|C|628
8B2L|1|A3|U|629
8B2L|1|A3|G|630
8B2L|1|A3|U|631
8B2L|1|A3|G|632
8B2L|1|A3|G|633

Current chains

Chain A3

25S rRNA

Nearby chains

Chain N3

eL28 (60S ribosomal protein L28)

Chain R3

60S ribosomal protein L32-1

Chain S3

eL33 (60S ribosomal protein L35a)