J3_8B2L_031

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UC*GGACG*CACGGA

Length

13 nucleotides

Bulged bases

8B2L|1|A3|C|1077, 8B2L|1|A3|C|1106

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8B2L|1|A3|U|998
8B2L|1|A3|C|999
*
8B2L|1|A3|G|1074
8B2L|1|A3|G|1075
8B2L|1|A3|A|1076
8B2L|1|A3|C|1077
8B2L|1|A3|G|1078
*
8B2L|1|A3|C|1104
8B2L|1|A3|A|1105
8B2L|1|A3|C|1106
8B2L|1|A3|G|1107
8B2L|1|A3|G|1108
8B2L|1|A3|A|1109

Current chains

Chain A3

25S rRNA

Nearby chains

Chain J3

60S ribosomal protein L21-1-like

Chain O3

60S ribosomal protein L29

Chain q3

60S ribosomal protein L7-4-like