J3_8B2L_037

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GCUUGCCG*CACGUGUCGUUG*CUUGAAGUACAAUUUCCAUC

Length

40 nucleotides

Bulged bases

8B2L|1|A3|U|3170, 8B2L|1|A3|G|3171, 8B2L|1|A3|U|3212, 8B2L|1|A3|A|3259, 8B2L|1|A3|U|3261, 8B2L|1|A3|C|3263, 8B2L|1|A3|U|3266, 8B2L|1|A3|U|3267, 8B2L|1|A3|U|3268

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8B2L|1|A3|G|3167
8B2L|1|A3|C|3168
8B2L|1|A3|U|3169
8B2L|1|A3|U|3170
8B2L|1|A3|G|3171
8B2L|1|A3|C|3172
8B2L|1|A3|C|3173
8B2L|1|A3|G|3174
*
8B2L|1|A3|C|3206
8B2L|1|A3|A|3207
8B2L|1|A3|C|3208
8B2L|1|A3|G|3209
8B2L|1|A3|U|3210
8B2L|1|A3|G|3211
8B2L|1|A3|U|3212
8B2L|1|A3|C|3213
8B2L|1|A3|G|3214
8B2L|1|A3|U|3215
8B2L|1|A3|U|3216
8B2L|1|A3|G|3217
*
8B2L|1|A3|C|3254
8B2L|1|A3|U|3255
8B2L|1|A3|U|3256
8B2L|1|A3|G|3257
8B2L|1|A3|A|3258
8B2L|1|A3|A|3259
8B2L|1|A3|G|3260
8B2L|1|A3|U|3261
8B2L|1|A3|A|3262
8B2L|1|A3|C|3263
8B2L|1|A3|A|3264
8B2L|1|A3|A|3265
8B2L|1|A3|U|3266
8B2L|1|A3|U|3267
8B2L|1|A3|U|3268
8B2L|1|A3|C|3269
8B2L|1|A3|C|3270
8B2L|1|A3|A|3271
8B2L|1|A3|U|3272
8B2L|1|A3|C|3273

Current chains

Chain A3

25S rRNA

Nearby chains

Chain B3

5.8S ribosomal RNA; 5.8S rRNA

Chain E3

60S ribosomal protein L14-1

Chain S3

eL33 (60S ribosomal protein L35a)

Chain b3

eL6 (60S ribosomal protein L6)

Chain d3

uL13 (60S ribosomal protein L13a)