J3_8B2L_046
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- C(PSU)UAAUU(PSU)*GGGGAAACU(PSU)AC*GGCCG
- Length
- 25 nucleotides
- Bulged bases
- 8B2L|1|h1|G|1202, 8B2L|1|h1|G|1204, 8B2L|1|h1|A|1206
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8B2L_046 not in the Motif Atlas
- Homologous match to J3_8C3A_040
- Geometric discrepancy: 0.1839
- The information below is about J3_8C3A_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.3
- Basepair signature
- cWW-F-F-F-tWW-F-tSH-tSS-cSS-F-F-F-F-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8B2L|1|h1|C|1183
8B2L|1|h1|PSU|1184
8B2L|1|h1|U|1185
8B2L|1|h1|A|1186
8B2L|1|h1|A|1187
8B2L|1|h1|U|1188
8B2L|1|h1|U|1189
8B2L|1|h1|PSU|1190
*
8B2L|1|h1|G|1201
8B2L|1|h1|G|1202
8B2L|1|h1|G|1203
8B2L|1|h1|G|1204
8B2L|1|h1|A|1205
8B2L|1|h1|A|1206
8B2L|1|h1|A|1207
8B2L|1|h1|C|1208
8B2L|1|h1|U|1209
8B2L|1|h1|PSU|1210
8B2L|1|h1|A|1211
8B2L|1|h1|C|1212
*
8B2L|1|h1|G|1459
8B2L|1|h1|G|1460
8B2L|1|h1|C|1461
8B2L|1|h1|C|1462
8B2L|1|h1|G|1463
Current chains
- Chain h1
- 18S rRNA
Nearby chains
- Chain R1
- 40S ribosomal protein S20-2
- Chain U1
- 40S ribosomal protein S18
- Chain V1
- 40S ribosomal protein S29
- Chain Y1
- 40S ribosomal protein S15-like
- Chain i2
- Transfer RNA; tRNA
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