J3_8B5L_005

3D structure

PDB id

8B5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

GAUG*CGCUAAGG*CAC

Length

15 nucleotides

Bulged bases

8B5L|1|5|A|1937

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8B5L|1|5|G|1908
8B5L|1|5|A|1909
8B5L|1|5|U|1910
8B5L|1|5|G|1911
*
8B5L|1|5|C|1933
8B5L|1|5|G|1934
8B5L|1|5|C|1935
8B5L|1|5|U|1936
8B5L|1|5|A|1937
8B5L|1|5|A|1938
8B5L|1|5|G|1939
8B5L|1|5|G|1940
*
8B5L|1|5|C|1955
8B5L|1|5|A|1956
8B5L|1|5|C|1957

Current chains

Chain 5

28S rRNA

Nearby chains