J3_8B5L_012
3D structure
- PDB id
- 8B5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.86 Å
Loop
- Sequence
- GGGG*CGCUUCUGGCGCCAAG*CGAC
- Length
- 24 nucleotides
- Bulged bases
- 8B5L|1|5|C|3844, 8B5L|1|5|U|3845, 8B5L|1|5|U|3846, 8B5L|1|5|G|3849
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8B5L_012 not in the Motif Atlas
- Homologous match to J3_8C3A_009
- Geometric discrepancy: 0.2486
- The information below is about J3_8C3A_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_02167.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-tHH-tHS-cWW
- Number of instances in this motif group
- 1
Unit IDs
8B5L|1|5|G|3819
8B5L|1|5|G|3820
8B5L|1|5|G|3821
8B5L|1|5|G|3822
*
8B5L|1|5|C|3842
8B5L|1|5|G|3843
8B5L|1|5|C|3844
8B5L|1|5|U|3845
8B5L|1|5|U|3846
8B5L|1|5|C|3847
8B5L|1|5|U|3848
8B5L|1|5|G|3849
8B5L|1|5|G|3850
8B5L|1|5|C|3851
8B5L|1|5|G|3852
8B5L|1|5|C|3853
8B5L|1|5|C|3854
8B5L|1|5|A|3855
8B5L|1|5|A|3856
8B5L|1|5|G|3857
*
8B5L|1|5|C|3901
8B5L|1|5|G|3902
8B5L|1|5|A|3903
8B5L|1|5|C|3904
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain A
- Ribosomal protein L8
- Chain G
- 60S ribosomal protein L7a
- Chain Z
- 60S ribosomal protein L27
- Chain c
- 60S ribosomal protein L30
- Chain g
- 60S ribosomal protein L34
- Chain p
- 60S ribosomal protein L37a
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