J3_8B5L_021
3D structure
- PDB id
- 8B5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.86 Å
Loop
- Sequence
- CAGUC*GUGCG*CGAUG
- Length
- 15 nucleotides
- Bulged bases
- 8B5L|1|5|C|698
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8B5L|1|5|C|451
8B5L|1|5|A|452
8B5L|1|5|G|453
8B5L|1|5|U|454
8B5L|1|5|C|455
*
8B5L|1|5|G|695
8B5L|1|5|U|696
8B5L|1|5|G|697
8B5L|1|5|C|698
8B5L|1|5|G|699
*
8B5L|1|5|C|1236
8B5L|1|5|G|1237
8B5L|1|5|A|1238
8B5L|1|5|U|1239
8B5L|1|5|G|1240
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain E
- 60S ribosomal protein L6
- Chain e
- Ribosomal protein L32
- Chain f
- 60S ribosomal protein L35a
- Chain r
- 60S ribosomal protein L28
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