J3_8B5L_023
3D structure
- PDB id
- 8B5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.86 Å
Loop
- Sequence
- AGAUGG*CGUUCCGAAGGG*CAGCCGA(PSU)
- Length
- 26 nucleotides
- Bulged bases
- 8B5L|1|5|C|2313, 8B5L|1|5|A|2315, 8B5L|1|5|G|2318
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8B5L|1|5|A|2294
8B5L|1|5|G|2295
8B5L|1|5|A|2296
8B5L|1|5|U|2297
8B5L|1|5|G|2298
8B5L|1|5|G|2299
*
8B5L|1|5|C|2308
8B5L|1|5|G|2309
8B5L|1|5|U|2310
8B5L|1|5|U|2311
8B5L|1|5|C|2312
8B5L|1|5|C|2313
8B5L|1|5|G|2314
8B5L|1|5|A|2315
8B5L|1|5|A|2316
8B5L|1|5|G|2317
8B5L|1|5|G|2318
8B5L|1|5|G|2319
*
8B5L|1|5|C|2344
8B5L|1|5|A|2345
8B5L|1|5|G|2346
8B5L|1|5|C|2347
8B5L|1|5|C|2348
8B5L|1|5|G|2349
8B5L|1|5|A|2350
8B5L|1|5|PSU|2351
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain A
- Ribosomal protein L8
- Chain G
- 60S ribosomal protein L7a
- Chain N
- Ribosomal protein L15
- Chain X
- Ribosomal_L23eN domain-containing protein
- Chain j
- Ribosomal protein L37
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