J3_8B5L_026
3D structure
- PDB id
- 8B5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.86 Å
Loop
- Sequence
- CGGUUG*CCUUC*GCACCGCACGUUCGUG
- Length
- 27 nucleotides
- Bulged bases
- 8B5L|1|5|U|4621, 8B5L|1|5|A|4677, 8B5L|1|5|C|4679, 8B5L|1|5|A|4682, 8B5L|1|5|C|4683, 8B5L|1|5|U|4689
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8B5L|1|5|C|4496
8B5L|1|5|G|4497
8B5L|1|5|G|4498
8B5L|1|5|U|4499
8B5L|1|5|U|4500
8B5L|1|5|G|4501
*
8B5L|1|5|C|4618
8B5L|1|5|C|4619
8B5L|1|5|U|4620
8B5L|1|5|U|4621
8B5L|1|5|C|4622
*
8B5L|1|5|G|4675
8B5L|1|5|C|4676
8B5L|1|5|A|4677
8B5L|1|5|C|4678
8B5L|1|5|C|4679
8B5L|1|5|G|4680
8B5L|1|5|C|4681
8B5L|1|5|A|4682
8B5L|1|5|C|4683
8B5L|1|5|G|4684
8B5L|1|5|U|4685
8B5L|1|5|U|4686
8B5L|1|5|C|4687
8B5L|1|5|G|4688
8B5L|1|5|U|4689
8B5L|1|5|G|4690
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain E
- 60S ribosomal protein L6
- Chain M
- 60S ribosomal protein L14
- Chain O
- 60S ribosomal protein L13a
- Chain f
- 60S ribosomal protein L35a
Coloring options: