J3_8B6C_004
3D structure
- PDB id
- 8B6C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of ribosome-Sec61 in complex with cyclotriazadisulfonamide derivative CK147
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.79 Å
Loop
- Sequence
- GCAG*CG(PSU)AG*UCCGAC
- Length
- 15 nucleotides
- Bulged bases
- 8B6C|1|5|A|1568
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8B6C_004 not in the Motif Atlas
- Homologous match to J3_5TBW_005
- Geometric discrepancy: 0.209
- The information below is about J3_5TBW_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_33851.1
- Basepair signature
- cWW-tSH-F-F-tHS-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
8B6C|1|5|G|1500
8B6C|1|5|C|1501
8B6C|1|5|A|1502
8B6C|1|5|G|1503
*
8B6C|1|5|C|1535
8B6C|1|5|G|1536
8B6C|1|5|PSU|1537
8B6C|1|5|A|1538
8B6C|1|5|G|1539
*
8B6C|1|5|U|1564
8B6C|1|5|C|1565
8B6C|1|5|C|1566
8B6C|1|5|G|1567
8B6C|1|5|A|1568
8B6C|1|5|C|1569
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain A
- Ribosomal protein L8
- Chain R
- 60S ribosomal protein L19
- Chain g
- 60S ribosomal protein L34
- Chain p
- 60S ribosomal protein L37a
Coloring options: