J3_8B6C_006
3D structure
- PDB id
- 8B6C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of ribosome-Sec61 in complex with cyclotriazadisulfonamide derivative CK147
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.79 Å
Loop
- Sequence
- CGAAGUG*CAA*UCUG
- Length
- 14 nucleotides
- Bulged bases
- 8B6C|1|5|A|2239
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8B6C_006 not in the Motif Atlas
- Homologous match to J3_8C3A_006
- Geometric discrepancy: 0.0884
- The information below is about J3_8C3A_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_10154.2
- Basepair signature
- cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F
- Number of instances in this motif group
- 3
Unit IDs
8B6C|1|5|C|2236
8B6C|1|5|G|2237
8B6C|1|5|A|2238
8B6C|1|5|A|2239
8B6C|1|5|G|2240
8B6C|1|5|U|2241
8B6C|1|5|G|2242
*
8B6C|1|5|C|2648
8B6C|1|5|A|2649
8B6C|1|5|A|2650
*
8B6C|1|5|U|2662
8B6C|1|5|C|2663
8B6C|1|5|U|2664
8B6C|1|5|G|2665
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain R
- 60S ribosomal protein L19
- Chain g
- 60S ribosomal protein L34
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