J3_8B7Y_003
3D structure
- PDB id
- 8B7Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the E.coli 70S ribosome in complex with the antibiotic Myxovalargin B.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UA*UACCGGUGG*CGG
- Length
- 14 nucleotides
- Bulged bases
- 8B7Y|1|C|U|723
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8B7Y_003 not in the Motif Atlas
- Homologous match to J3_5J7L_003
- Geometric discrepancy: 0.0901
- The information below is about J3_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_11934.4
- Basepair signature
- cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8B7Y|1|C|U|672
8B7Y|1|C|A|673
*
8B7Y|1|C|U|717
8B7Y|1|C|A|718
8B7Y|1|C|C|719
8B7Y|1|C|C|720
8B7Y|1|C|G|721
8B7Y|1|C|G|722
8B7Y|1|C|U|723
8B7Y|1|C|G|724
8B7Y|1|C|G|725
*
8B7Y|1|C|C|732
8B7Y|1|C|G|733
8B7Y|1|C|G|734
Current chains
- Chain C
- 16S ribosomal RNA
Nearby chains
- Chain 5
- 30S ribosomal protein S21
- Chain H
- 30S ribosomal protein S6
- Chain p
- 30S ribosomal protein S11
- Chain t
- 30S ribosomal protein S15
- Chain w
- 30S ribosomal protein S18
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