J3_8B7Y_022

3D structure

PDB id

8B7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the E.coli 70S ribosome in complex with the antibiotic Myxovalargin B.

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8B7Y_022 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.0668

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn 3-way junction

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

8B7Y|1|I|C|2091
8B7Y|1|I|U|2092
8B7Y|1|I|G|2093
*
8B7Y|1|I|C|2196
8B7Y|1|I|U|2197
8B7Y|1|I|A|2198
8B7Y|1|I|A|2199
8B7Y|1|I|C|2200
*
8B7Y|1|I|G|2223
8B7Y|1|I|G|2224
8B7Y|1|I|A|2225
8B7Y|1|I|C|2226
8B7Y|1|I|A|2227
8B7Y|1|I|G|2228

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L2

Chain f

50S ribosomal protein L28