J3_8BF7_005

3D structure

PDB id

8BF7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BF7_005 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.0936

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn in J3

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

8BF7|1|0|C|2091
8BF7|1|0|U|2092
8BF7|1|0|G|2093
*
8BF7|1|0|C|2196
8BF7|1|0|U|2197
8BF7|1|0|A|2198
8BF7|1|0|A|2199
8BF7|1|0|C|2200
*
8BF7|1|0|G|2223
8BF7|1|0|G|2224
8BF7|1|0|A|2225
8BF7|1|0|C|2226
8BF7|1|0|A|2227
8BF7|1|0|G|2228

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain A

50S ribosomal protein L2

Chain F

50S ribosomal protein L9

Chain U

50S ribosomal protein L28