J3_8BF7_012
3D structure
- PDB id
- 8BF7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.33 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCUA
- Length
- 25 nucleotides
- Bulged bases
- 8BF7|1|2|A|975, 8BF7|1|2|G|976, 8BF7|1|2|A|978
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8BF7_012 not in the Motif Atlas
- Homologous match to J3_5J7L_006
- Geometric discrepancy: 0.1236
- The information below is about J3_5J7L_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.4
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8BF7|1|2|U|955
8BF7|1|2|U|956
8BF7|1|2|U|957
8BF7|1|2|A|958
8BF7|1|2|A|959
8BF7|1|2|U|960
8BF7|1|2|U|961
8BF7|1|2|C|962
*
8BF7|1|2|G|973
8BF7|1|2|A|974
8BF7|1|2|A|975
8BF7|1|2|G|976
8BF7|1|2|A|977
8BF7|1|2|A|978
8BF7|1|2|C|979
8BF7|1|2|C|980
8BF7|1|2|U|981
8BF7|1|2|U|982
8BF7|1|2|A|983
8BF7|1|2|C|984
*
8BF7|1|2|G|1221
8BF7|1|2|G|1222
8BF7|1|2|C|1223
8BF7|1|2|U|1224
8BF7|1|2|A|1225
Current chains
- Chain 2
- 16S rRNA RRSB-RRNA
Nearby chains
- Chain 5
- Transfer RNA; tRNA
- Chain n
- 30S ribosomal protein S10
- Chain q
- 30S ribosomal protein S13
- Chain r
- 30S ribosomal protein S14
- Chain w
- 30S ribosomal protein S19
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