J3_8BF7_016

3D structure

PDB id

8BF7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BF7_016 not in the Motif Atlas

Geometric match to J3_4WF9_010

Geometric discrepancy: 0.1248

The information below is about J3_4WF9_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_60031.2

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

7

Unit IDs

8BF7|1|0|G|30
8BF7|1|0|C|31
*
8BF7|1|0|G|474
8BF7|1|0|C|475
8BF7|1|0|G|476
8BF7|1|0|A|477
8BF7|1|0|A|478
8BF7|1|0|A|479
8BF7|1|0|A|480
8BF7|1|0|G|481
*
8BF7|1|0|C|509
8BF7|1|0|C|510

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain N

50S ribosomal protein L20

Chain R

50S ribosomal protein L24