3D structure

PDB id
8BF7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
Experimental method
ELECTRON MICROSCOPY
Resolution
2.33 Å

Loop

Sequence
CCUG*CGAUAGUGAACCAGUAC*GGAAAG
Length
27 nucleotides
Bulged bases
8BF7|1|0|U|34, 8BF7|1|0|U|448, 8BF7|1|0|C|456
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8BF7_018 not in the Motif Atlas
Homologous match to J3_5J7L_067
Geometric discrepancy: 0.1019
The information below is about J3_5J7L_067
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_30040.2
Basepair signature
cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
Number of instances in this motif group
7

Unit IDs

8BF7|1|0|C|32
8BF7|1|0|C|33
8BF7|1|0|U|34
8BF7|1|0|G|35
*
8BF7|1|0|C|445
8BF7|1|0|G|446
8BF7|1|0|A|447
8BF7|1|0|U|448
8BF7|1|0|A|449
8BF7|1|0|G|450
8BF7|1|0|U|451
8BF7|1|0|G|452
8BF7|1|0|A|453
8BF7|1|0|A|454
8BF7|1|0|C|455
8BF7|1|0|C|456
8BF7|1|0|A|457
8BF7|1|0|G|458
8BF7|1|0|U|459
8BF7|1|0|A|460
8BF7|1|0|C|461
*
8BF7|1|0|G|468
8BF7|1|0|G|469
8BF7|1|0|A|470
8BF7|1|0|A|471
8BF7|1|0|A|472
8BF7|1|0|G|473

Current chains

Chain 0
23S rRNA RRLG-RRNA

Nearby chains

Chain C
50S ribosomal protein L4
Chain N
50S ribosomal protein L20
Chain Q
50S ribosomal protein L23
Chain c
50S ribosomal protein L34

Coloring options:


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