J3_8BF7_022

3D structure

PDB id

8BF7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BF7_022 not in the Motif Atlas

Homologous match to J3_7A0S_019

Geometric discrepancy: 0.1449

The information below is about J3_7A0S_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8BF7|1|0|G|1424
8BF7|1|0|G|1425
8BF7|1|0|G|1426
8BF7|1|0|A|1427
8BF7|1|0|C|1428
8BF7|1|0|G|1429
*
8BF7|1|0|C|1564
8BF7|1|0|C|1565
*
8BF7|1|0|G|1568
8BF7|1|0|A|1569
8BF7|1|0|A|1570
8BF7|1|0|A|1571
8BF7|1|0|A|1572
8BF7|1|0|G|1573
8BF7|1|0|C|1574

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain A

50S ribosomal protein L2