3D structure

PDB id
8BF7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
Experimental method
ELECTRON MICROSCOPY
Resolution
2.33 Å

Loop

Sequence
CAAG*CUAGUAA*UGAAUACG
Length
19 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8BF7_032 not in the Motif Atlas
Homologous match to J3_5J7L_052
Geometric discrepancy: 0.1135
The information below is about J3_5J7L_052
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_25303.4
Basepair signature
cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW
Number of instances in this motif group
4

Unit IDs

8BF7|1|2|C|936
8BF7|1|2|A|937
8BF7|1|2|A|938
8BF7|1|2|G|939
*
8BF7|1|2|C|1344
8BF7|1|2|U|1345
8BF7|1|2|A|1346
8BF7|1|2|G|1347
8BF7|1|2|U|1348
8BF7|1|2|A|1349
8BF7|1|2|A|1350
*
8BF7|1|2|U|1372
8BF7|1|2|G|1373
8BF7|1|2|A|1374
8BF7|1|2|A|1375
8BF7|1|2|U|1376
8BF7|1|2|A|1377
8BF7|1|2|C|1378
8BF7|1|2|G|1379

Current chains

Chain 2
16S rRNA RRSB-RRNA

Nearby chains

Chain k
30S ribosomal protein S7
Chain m
30S ribosomal protein S9

Coloring options:


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