J3_8BGE_005

3D structure

PDB id

8BGE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAm6A mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.11 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BGE_005 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.0874

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn 3-way junction

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

8BGE|1|0|C|2091
8BGE|1|0|U|2092
8BGE|1|0|G|2093
*
8BGE|1|0|C|2196
8BGE|1|0|U|2197
8BGE|1|0|A|2198
8BGE|1|0|A|2199
8BGE|1|0|C|2200
*
8BGE|1|0|G|2223
8BGE|1|0|G|2224
8BGE|1|0|A|2225
8BGE|1|0|C|2226
8BGE|1|0|A|2227
8BGE|1|0|G|2228

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain A

50S ribosomal protein L2

Chain F

50S ribosomal protein L9

Chain U

50S ribosomal protein L28