J3_8BGE_008
3D structure
- PDB id
- 8BGE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAm6A mRNA codon in the A-site after uncompleted di-peptide formation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.11 Å
Loop
- Sequence
- GAAC*GUUGAU*AAUGAAC
- Length
- 17 nucleotides
- Bulged bases
- 8BGE|1|0|U|2833
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8BGE_008 not in the Motif Atlas
- Homologous match to J3_5J7L_048
- Geometric discrepancy: 0.1546
- The information below is about J3_5J7L_048
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_64069.1
- Basepair signature
- cWW-tHS-F-F-F-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
8BGE|1|0|G|2812
8BGE|1|0|A|2813
8BGE|1|0|A|2814
8BGE|1|0|C|2815
*
8BGE|1|0|G|2831
8BGE|1|0|U|2832
8BGE|1|0|U|2833
8BGE|1|0|G|2834
8BGE|1|0|A|2835
8BGE|1|0|U|2836
*
8BGE|1|0|A|2882
8BGE|1|0|A|2883
8BGE|1|0|U|2884
8BGE|1|0|G|2885
8BGE|1|0|A|2886
8BGE|1|0|A|2887
8BGE|1|0|C|2888
Current chains
- Chain 0
- 23S rRNA RRLG-RRNA
Nearby chains
- Chain B
- 50S ribosomal protein L3
- Chain K
- 50S ribosomal protein L17
- Chain P
- 50S ribosomal protein L22
- Chain a
- 50S ribosomal protein L32
Coloring options: