J3_8BGE_035
3D structure
- PDB id
- 8BGE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAm6A mRNA codon in the A-site after uncompleted di-peptide formation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.11 Å
Loop
- Sequence
- UAU*AGACUGC*GAGGAAGGUG
- Length
- 20 nucleotides
- Bulged bases
- 8BGE|1|2|U|1183
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8BGE_035 not in the Motif Atlas
- Homologous match to J3_4LFB_018
- Geometric discrepancy: 0.1364
- The information below is about J3_4LFB_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_40706.1
- Basepair signature
- cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
8BGE|1|2|U|1116
8BGE|1|2|A|1117
8BGE|1|2|U|1118
*
8BGE|1|2|A|1155
8BGE|1|2|G|1156
8BGE|1|2|A|1157
8BGE|1|2|C|1158
8BGE|1|2|U|1159
8BGE|1|2|G|1160
8BGE|1|2|C|1161
*
8BGE|1|2|G|1175
8BGE|1|2|A|1176
8BGE|1|2|G|1177
8BGE|1|2|G|1178
8BGE|1|2|A|1179
8BGE|1|2|A|1180
8BGE|1|2|G|1181
8BGE|1|2|G|1182
8BGE|1|2|U|1183
8BGE|1|2|G|1184
Current chains
- Chain 2
- 16S rRNA RRSB-RRNA
Nearby chains
- Chain f
- 30S ribosomal protein S2
- Chain m
- 30S ribosomal protein S9
- Chain n
- 30S ribosomal protein S10
- Chain r
- 30S ribosomal protein S14
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