J3_8BGH_015
3D structure
- PDB id
- 8BGH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAA mRNA codon in the A-site after uncompleted di-peptide formation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.88 Å
Loop
- Sequence
- CGUCAG*CGCAACC*GAUGACG
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8BGH_015 not in the Motif Atlas
- Homologous match to J3_4LFB_007
- Geometric discrepancy: 0.1331
- The information below is about J3_4LFB_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01343.1
- Basepair signature
- cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8BGH|1|2|C|1063
8BGH|1|2|G|1064
8BGH|1|2|U|1065
8BGH|1|2|C|1066
8BGH|1|2|A|1067
8BGH|1|2|G|1068
*
8BGH|1|2|C|1107
8BGH|1|2|G|1108
8BGH|1|2|C|1109
8BGH|1|2|A|1110
8BGH|1|2|A|1111
8BGH|1|2|C|1112
8BGH|1|2|C|1113
*
8BGH|1|2|G|1187
8BGH|1|2|A|1188
8BGH|1|2|U|1189
8BGH|1|2|G|1190
8BGH|1|2|A|1191
8BGH|1|2|C|1192
8BGH|1|2|G|1193
Current chains
- Chain 2
- 16S rRNA RRSB-RRNA
Nearby chains
- Chain f
- 30S ribosomal protein S2
- Chain g
- 30S ribosomal protein S3
- Chain i
- 30S ribosomal protein S5
- Chain k
- 30S ribosomal protein S7
- Chain m
- 30S ribosomal protein S9
- Chain n
- 30S ribosomal protein S10
- Chain r
- 30S ribosomal protein S14
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