J3_8BGH_018
3D structure
- PDB id
- 8BGH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAA mRNA codon in the A-site after uncompleted di-peptide formation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.88 Å
Loop
- Sequence
- CCUG*CGAUAGUGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 8BGH|1|0|U|34, 8BGH|1|0|U|448, 8BGH|1|0|C|456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8BGH_018 not in the Motif Atlas
- Homologous match to J3_5J7L_067
- Geometric discrepancy: 0.1042
- The information below is about J3_5J7L_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
8BGH|1|0|C|32
8BGH|1|0|C|33
8BGH|1|0|U|34
8BGH|1|0|G|35
*
8BGH|1|0|C|445
8BGH|1|0|G|446
8BGH|1|0|A|447
8BGH|1|0|U|448
8BGH|1|0|A|449
8BGH|1|0|G|450
8BGH|1|0|U|451
8BGH|1|0|G|452
8BGH|1|0|A|453
8BGH|1|0|A|454
8BGH|1|0|C|455
8BGH|1|0|C|456
8BGH|1|0|A|457
8BGH|1|0|G|458
8BGH|1|0|U|459
8BGH|1|0|A|460
8BGH|1|0|C|461
*
8BGH|1|0|G|468
8BGH|1|0|G|469
8BGH|1|0|A|470
8BGH|1|0|A|471
8BGH|1|0|A|472
8BGH|1|0|G|473
Current chains
- Chain 0
- 23S rRNA RRLG-RRNA
Nearby chains
- Chain C
- 50S ribosomal protein L4
- Chain N
- 50S ribosomal protein L20
- Chain Q
- 50S ribosomal protein L23
- Chain c
- 50S ribosomal protein L34
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