J3_8BGH_030
3D structure
- PDB id
- 8BGH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAA mRNA codon in the A-site after uncompleted di-peptide formation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.88 Å
Loop
- Sequence
- UA*UACCGGUGG*CGG
- Length
- 14 nucleotides
- Bulged bases
- 8BGH|1|2|U|723
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8BGH_030 not in the Motif Atlas
- Homologous match to J3_5J7L_003
- Geometric discrepancy: 0.1563
- The information below is about J3_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_11934.4
- Basepair signature
- cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8BGH|1|2|U|672
8BGH|1|2|A|673
*
8BGH|1|2|U|717
8BGH|1|2|A|718
8BGH|1|2|C|719
8BGH|1|2|C|720
8BGH|1|2|G|721
8BGH|1|2|G|722
8BGH|1|2|U|723
8BGH|1|2|G|724
8BGH|1|2|G|725
*
8BGH|1|2|C|732
8BGH|1|2|G|733
8BGH|1|2|G|734
Current chains
- Chain 2
- 16S rRNA RRSB-RRNA
Nearby chains
- Chain j
- 30S ribosomal protein S6
- Chain o
- 30S ribosomal protein S11
- Chain s
- 30S ribosomal protein S15
- Chain v
- 30S ribosomal protein S18
- Chain y
- 30S ribosomal protein S21
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