J3_8BGH_031
3D structure
- PDB id
- 8BGH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAA mRNA codon in the A-site after uncompleted di-peptide formation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.88 Å
Loop
- Sequence
- CAAG*CUAGUAA*UGAAUACG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8BGH_031 not in the Motif Atlas
- Homologous match to J3_5J7L_052
- Geometric discrepancy: 0.115
- The information below is about J3_5J7L_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_25303.4
- Basepair signature
- cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW
- Number of instances in this motif group
- 4
Unit IDs
8BGH|1|2|C|936
8BGH|1|2|A|937
8BGH|1|2|A|938
8BGH|1|2|G|939
*
8BGH|1|2|C|1344
8BGH|1|2|U|1345
8BGH|1|2|A|1346
8BGH|1|2|G|1347
8BGH|1|2|U|1348
8BGH|1|2|A|1349
8BGH|1|2|A|1350
*
8BGH|1|2|U|1372
8BGH|1|2|G|1373
8BGH|1|2|A|1374
8BGH|1|2|A|1375
8BGH|1|2|U|1376
8BGH|1|2|A|1377
8BGH|1|2|C|1378
8BGH|1|2|G|1379
Current chains
- Chain 2
- 16S rRNA RRSB-RRNA
Nearby chains
- Chain k
- 30S ribosomal protein S7
- Chain m
- 30S ribosomal protein S9
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