J3_8BH4_017

3D structure

PDB id

8BH4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAm6A mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

8BH4|1|0|A|504, 8BH4|1|0|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BH4_017 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.1462

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.1

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

8BH4|1|0|G|30
8BH4|1|0|C|31
*
8BH4|1|0|G|474
8BH4|1|0|C|475
8BH4|1|0|G|476
8BH4|1|0|A|477
8BH4|1|0|A|478
8BH4|1|0|A|479
8BH4|1|0|A|480
8BH4|1|0|G|481
8BH4|1|0|A|482
8BH4|1|0|A|483
8BH4|1|0|C|484
*
8BH4|1|0|G|496
8BH4|1|0|A|497
8BH4|1|0|G|498
8BH4|1|0|U|499
8BH4|1|0|G|500
8BH4|1|0|A|501
8BH4|1|0|A|502
8BH4|1|0|A|503
8BH4|1|0|A|504
8BH4|1|0|A|505
8BH4|1|0|G|506
8BH4|1|0|A|507
8BH4|1|0|A|508
8BH4|1|0|C|509
8BH4|1|0|C|510

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain N

50S ribosomal protein L20

Chain P

50S ribosomal protein L22

Chain R

50S ribosomal protein L24