3D structure

PDB id
8BH4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAm6A mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
Experimental method
ELECTRON MICROSCOPY
Resolution
2.62 Å

Loop

Sequence
GGGACG*CC*GAAAAGC
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8BH4_022 not in the Motif Atlas
Homologous match to J3_7A0S_019
Geometric discrepancy: 0.1389
The information below is about J3_7A0S_019
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_34864.2
Basepair signature
cWW-F-cWW-F-tHH-F-tHS-tHS-cWW
Number of instances in this motif group
4

Unit IDs

8BH4|1|0|G|1424
8BH4|1|0|G|1425
8BH4|1|0|G|1426
8BH4|1|0|A|1427
8BH4|1|0|C|1428
8BH4|1|0|G|1429
*
8BH4|1|0|C|1564
8BH4|1|0|C|1565
*
8BH4|1|0|G|1568
8BH4|1|0|A|1569
8BH4|1|0|A|1570
8BH4|1|0|A|1571
8BH4|1|0|A|1572
8BH4|1|0|G|1573
8BH4|1|0|C|1574

Current chains

Chain 0
23S rRNA RRLG-RRNA

Nearby chains

Chain A
50S ribosomal protein L2

Coloring options:


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