3D structure

PDB id
8BH4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAm6A mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
Experimental method
ELECTRON MICROSCOPY
Resolution
2.62 Å

Loop

Sequence
UA*UACCGGUGG*CGG
Length
14 nucleotides
Bulged bases
8BH4|1|2|U|723
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8BH4_031 not in the Motif Atlas
Homologous match to J3_5J7L_003
Geometric discrepancy: 0.1718
The information below is about J3_5J7L_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_11934.4
Basepair signature
cWW-cWW-tWW-cWW-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

8BH4|1|2|U|672
8BH4|1|2|A|673
*
8BH4|1|2|U|717
8BH4|1|2|A|718
8BH4|1|2|C|719
8BH4|1|2|C|720
8BH4|1|2|G|721
8BH4|1|2|G|722
8BH4|1|2|U|723
8BH4|1|2|G|724
8BH4|1|2|G|725
*
8BH4|1|2|C|732
8BH4|1|2|G|733
8BH4|1|2|G|734

Current chains

Chain 2
16S rRNA RRSB-RRNA

Nearby chains

Chain j
30S ribosomal protein S6
Chain o
30S ribosomal protein S11
Chain s
30S ribosomal protein S15
Chain v
30S ribosomal protein S18
Chain y
30S ribosomal protein S21

Coloring options:


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