J3_8BHF_002

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCC*GCCGG*CCACGCGUCCCCCGCG

Length

24 nucleotides

Bulged bases

8BHF|1|A2|C|1235, 8BHF|1|A2|G|1269, 8BHF|1|A2|C|1270

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BHF|1|A2|U|984
8BHF|1|A2|C|985
8BHF|1|A2|C|986
*
8BHF|1|A2|G|1068
8BHF|1|A2|C|1069
8BHF|1|A2|C|1070
8BHF|1|A2|G|1071
8BHF|1|A2|G|1072
*
8BHF|1|A2|C|1234
8BHF|1|A2|C|1235
8BHF|1|A2|A|1236
8BHF|1|A2|C|1237
8BHF|1|A2|G|1242
8BHF|1|A2|C|1243
8BHF|1|A2|G|1244
8BHF|1|A2|U|1245
8BHF|1|A2|C|1246
8BHF|1|A2|C|1247
8BHF|1|A2|C|1248
8BHF|1|A2|C|1249
8BHF|1|A2|C|1250
8BHF|1|A2|G|1269
8BHF|1|A2|C|1270
8BHF|1|A2|G|1271

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain O1

60S ribosomal protein L29

Chain l3

60S ribosomal protein L4

Chain n3

60S ribosomal protein L6

Chain o3

60S ribosomal protein L7