J3_8BHF_009

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGG*CUGAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BHF|1|A2|C|3932
8BHF|1|A2|G|3933
8BHF|1|A2|G|3934
*
8BHF|1|A2|C|4068
8BHF|1|A2|U|4069
8BHF|1|A2|G|4070
8BHF|1|A2|A|4071
8BHF|1|A2|C|4072
*
8BHF|1|A2|G|4154
8BHF|1|A2|G|4155
8BHF|1|A2|A|4156
8BHF|1|A2|C|4157
8BHF|1|A2|A|4158
8BHF|1|A2|G|4159

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain A1

Ribosomal protein L15

Chain j3

60S ribosomal protein L8

Chain p3

60S ribosomal protein L7a