J3_8BHF_013

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAU*GCUUCU*AAGG

Length

13 nucleotides

Bulged bases

8BHF|1|A2|U|4971, 8BHF|1|A2|C|4972

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BHF|1|A2|C|4952
8BHF|1|A2|A|4953
8BHF|1|A2|U|4954
*
8BHF|1|A2|G|4968
8BHF|1|A2|C|4969
8BHF|1|A2|U|4970
8BHF|1|A2|U|4971
8BHF|1|A2|C|4972
8BHF|1|A2|U|4973
*
8BHF|1|A2|A|5042
8BHF|1|A2|A|5043
8BHF|1|A2|G|5044
8BHF|1|A2|G|5045

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain C1

60S ribosomal protein L17

Chain Q1

60S ribosomal protein L31

Chain k3

Ribosomal protein L3