J3_8BHF_015
3D structure
- PDB id
- 8BHF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AUUC*GGACCAGAG*CAUUU
- Length
- 18 nucleotides
- Bulged bases
- 8BHF|1|A3|G|991
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8BHF_015 not in the Motif Atlas
- Homologous match to J3_4V88_033
- Geometric discrepancy: 0.1009
- The information below is about J3_4V88_033
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38616.1
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
8BHF|1|A3|A|938
8BHF|1|A3|U|939
8BHF|1|A3|U|940
8BHF|1|A3|C|941
*
8BHF|1|A3|G|985
8BHF|1|A3|G|986
8BHF|1|A3|A|987
8BHF|1|A3|C|988
8BHF|1|A3|C|989
8BHF|1|A3|A|990
8BHF|1|A3|G|991
8BHF|1|A3|A|992
8BHF|1|A3|G|993
*
8BHF|1|A3|C|1000
8BHF|1|A3|A|1001
8BHF|1|A3|U|1002
8BHF|1|A3|U|1003
8BHF|1|A3|U|1004
Current chains
- Chain A3
- 18S ribosomal RNA
Nearby chains
- Chain C3
- 40S ribosomal protein S3a
- Chain O3
- ribosomal protein uS15
- Chain P3
- Ribosomal protein S14
- Chain b3
- 40S ribosomal protein S26
- Chain c1
- 60S ribosomal protein L37a
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